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Under Review
Journal Publications
- "A Laparoscopic Telesurgical Workstation."
M. C. Cavusoglu, F. Tendick, M. Cohn, and S. S. Sastry. In the IEEE Transactions on Robotics and Automation, Vol. 15, No. 4,
August 1999, pp. 728-739.

- "A Virtual Environment Testbed for Training
Laparoscopic Surgical Skills." F. Tendick, M. Downes,
T. Goktekin, M. C. Cavusoglu, D. Feygin, X. Wu, R. Eyal, M. Hegarty,
and L. W. Way. In Presence, Vol. 9, No. 3, June 2000
, pp. 236-255.

- "Design of Bilateral Teleoperation Controllers
for Haptic Exploration and Telemanipulation of Soft Environments. "
M. C. Cavusoglu, A. Sherman, and F. Tendick. In the IEEE Transactions
on Robotics and Automation, Vol. 18, No.4, August 2002, pp 641-647.

- "A Critical Study of the Mechanical and
Electrical Properties of the PHANToM(TM) Haptic Interface and Improvements
for High Performance Control." M. C. Cavusoglu, D.
Feygin, and F. Tendick. In Presence, Vol. 11, No. 6, December
2002, pp. 555-568.

- "Robotics for Telesurgery: Second Generation
Berkeley/UCSF Laparoscopic Telesurgical Workstation and Looking towards
the Future Applications " M. C. Cavusoglu, W. Williams,
F. Tendick, and S. S. Sastry. In Industrial Robot, Special
Issue on Medical Robotics, Vol. 30, No.1, January 2003, pp. 22-29.

- "In Touch with Robotics: Neurosurgery for
the Future." N. Nathoo, M. C. Cavusoglu, M. A. Vogelbaum,
and G. H. Barnett. In Nerosurgery. Vol. 56, No.3, March 2005,
pp.421-433.

- "GiPSi: A Framework for Open Source/Open
Architecture Software Development for Organ Level Surgical Simulation." M. C. Cavusoglu, T. Goktekin, and F. Tendick. In IEEE Transactions
on Information Technology in Biomedicine, Vol. 10, No. 2, April
2006, pp. 312-321.
- "Intelligent Control Algorithms for Robotic-Assisted Beating Heart Surgery ." O. Bebek and M. C. Cavusoglu. In IEEE Transactions on Robotics,
Vol. 23, No. 3, June 2007, pp. 468-480.
- "Quantitative Comparison of Bilateral Teleoperation
Systems Using Mu-Synthesis." K. Kim, M. C. Cavusoglu, and
W.K. Chung. In IEEE Transactions on Robotics, Vol. 23, No. 4, August 2007, pp. 776-789.
- "Design and Characterization of a Novel
Hybrid Actuator Using Shape Memory Alloy and DC Micro-Motor for Minimally
Invasive Surgery Applications." V. R. C. Kode, and M. C.
Cavusoglu. In IEEE/ASME Transactions on Mechatronics, Vol. 12, No. 4, August 2007, pp. 455-464.
- “Whisker-like Position Sensor for Measuring Physiological Motion.” O. Bebek and M. C. Cavusoglu. In IEEE/ASME Transactions on Mechatronics, 2008. (In Press).
Book Chapters
- "Telesurgery and Surgical Simulation: Haptic
Interfaces to Real and Virtual Surgical Environments."
M. C. Cavusoglu, F. Tendick, and S. S. Sastry. In McLaughlin,
M. L., Hespanha, J. P., and Sukhatme, G., editors. Touch in virtual
environments. IMSC Series in Multimedia. Prentice-Hall, Inc., Upper
Saddle River, NJ. 2001.

- "Medical Robotics in Surgery." M. C. Cavusoglu. In M. Akay, editor, Wiley Encyclopedia of Biomedical
Engineering, John Wiley and Sons, Inc. 2006. (In Press).
- “Surgical Simulation Technologies.” M. C. Cavusoglu. In M. Kutz, editor, Handbook of Biomedical Engineering and Design, Second Edition, McGraw-Hill, Inc. 2009. (In Press).
Conference Publications
- "Human Hand Trajectory Analysis in Point-and-Direct
Telerobotics." T. T. Blackmon, M. C. Cavusoglu, F.
Lai, and L. W. Stark. In Proceedings of the 8th International
Conference on Advanced Robotics (ICAR '97), Monterey, CA, July 7-9,
1997, pp. 927-932.

- "A Hybrid System Approach to Contact Stability
and Force Control in Robotic Manipulators." M. C.
Cavusoglu, J. Yan, and S. S. Sastry. In Proceedings of the
12th IEEE International Symposium on Intelligent Control (ISIC'97),
Istanbul, Turkey, July 16-18, 1997, pp. 143-148.

- "Human Machine Interfaces for Minimally
Invasive Surgery." F. Tendick, and M. C. Cavusoglu.
In Proceedings of the 19th Annual International Conference of the
IEEE Engineering in Medicine and Biology Society (EMBS'97), Chicago,
IL, October 30- November 2, 1997, pp. 2771-2776.

- "Laparoscopic Telesurgical Workstation."
M. C. Cavusoglu, M. Cohn, F. Tendick, and S. S. Sastry.
In Proceedings of the SPIE International Symposium on Biological
Optics (BIOS'98) , San Jose, CA, January 24-30, 1998, pp. 296-303.

- "Development of Virtual Environments for
Training Skills and Reducing Errors in Laparoscopic Surgery." F. Tendick, M. S. Downes, M. C. Cavusoglu, and L. W. Way.
In Proceedings of the SPIE International Symposium on Biological
Optics (BIOS'98) , San Jose, CA, January 24-30, 1998, pp. 36-44.

- "Virtual Environments for Training Critical
Skills in Laparoscopic Surgery." M. S. Downes, M.
C. Cavusoglu, W. Gantert, L. W. Way, and F. Tendick. In Proceedings
of Medicine Meets Virtual Reality VI (MMVR'98) , San Diego, CA,
January 28-31, 1998, pp. 316-322.

- "Modeling the Dynamics of the Human Thigh
for a Realistic Echographic Simulator with Force Feedback."
D. d'Aulignac, M. C. Cavusoglu, and C. Laugier. In the Proceedings
of the Second International Conference on Medical Image Computing and
Computer-Assisted Intervention (MICCAI99), Cambridge, England,
September 19-22, 1999.

- "Towards a Realistic Echographic Simulator
with Force Feedback." D. d'Aulignac, C. Laugier, and
M. C. Cavusoglu. In the Proceedings of the IEEE/RSJ International
Conference on Intelligent Robots and Systems (IROS'99), Kyongju,
Korea, October 17-21, 1999, pp. 727-732.

- "Multirate Simulation for High Fidelity
Haptic Interaction with Deformable Objects in Virtual Environments."
M. C. Cavusoglu, F. Tendick. In Proceedings of the IEEE International
Conference on Robotics and Automation (ICRA 2000), San Francisco,
CA, April 24-28, 2000, pp. 2458-2465.

- "Maximizing the Sensation of Compliance
in Teleoperative Surgery." F. Tendick, M. C. Cavusoglu,
N. Dhruv, and A. Sherman. In Proceedings of the Eighth International
Symposium on Robotics with Applications, part of the World Automation
Congress (WAC 2000), Maui, HI, June 11-16, 2000.
 Joseph H. Engelberger best paper award.
- "Comparison of Teleoperator Control Architectures
for Palpation Task." A. Sherman, M. C. Cavusoglu,
F. Tendick. In Proceedings of the ASME Dynamic Systems and
Control Division, part of the ASME International Mechanical Engineering
Congress and Exposition (IMECE 2000), Orlando, FL, November 5-10,
2000, vol. 2, pp. 1261-1268.

- "Bilateral Controller Design for Telemanipulation
in Soft Environments." M. C. Cavusoglu, A. Sherman,
F. Tendick. In the Proceedings of the IEEE International Conference
on Robotics and Automation (ICRA 2001), Seoul, Korea, May 21-26,
2001, pp. 1045-1052.

- "Workspace Analysis of Robotic Manipulators
for a Teleoperated Suturing Task." M. C. Cavusoglu,
I. Villanueva, F. Tendick. To appear in the Proceedings of the IEEE/RSJ
International Conference on Intelligent Robots and Systems (IROS 2001),
Maui, HI, October 29-November 3, 2001, pp. 2234-2239.

- "Robotics for Telesurgery: Second Generation
Berkeley/UCSF Laparoscopic Telesurgical Workstation and Looking towards
the Future Applications." M. C. Cavusoglu, W. Williams,
F. Tendick, S.S. Sastry. In the Proceedings of the 39th Allerton
Conference on Communication, Control and Computing, Monticello,
IL, October 3-5, 2001. (Invited paper).

- "Framework for Open Source Software Development
for Organ Simulation in the Digital Human." M. C. Cavusoglu,
T. Goktekin, F. Tendick and S. S. Sastry. In Proceedings of the International
Conference on High Performance Computing (HIPC 2002), Bangalore,
India, December 18-21, 2002, pp. 713-714.

- "Kalman Filter Analysis for Quantitative
Comparison of Sensory Schemes in Bilateral Teleoperation Systems." M. C. Cavusoglu, and F. Tendick. In Proceedings of the IEEE International
Conference on Robotics and Automation (ICRA 2003), Taipei, Taiwan,
May 12-17, 2003, pp. 2818-2823.

- "GiPSi: An Open Source/Open Architecture
Software Development Framework for Surgical Simulation." M. C. Cavusoglu, T. G. Goktekin, F. Tendick, and S. S. Sastry. In Proceedings of Medicine Meets Virtual Reality XII (MMVR 2004),
Newport Beach, CA, January 14-17, 2004, pp.46-48.

- "GiPSi: A Draft Open Source/Open Architecture
Software Development Framework for Surgical Simulation," T. Goktekin, M.C. Cavusoglu, F. Tendick, and S. S. Sastry. In Proceedings
of the International Symposium on Medical Simulation, Cambridge,
MA, June17-18, 2004. pp. 240-248.

- "Computationally Efficient Cardiac Bioelectricity
Models Toward Whole-Heart Simulation" N. A. Wedge, M. S.
Branicky, and M. C. Cavusoglu. In Proceedings of the 26th Annual
International Conference of the IEEE Engineering in Medicine and Biology
Society (EMBS 2004), San Francisco, CA, September 1-5, 2004. pp.
3027-3030.
- "Quantitative Comparison of Bilateral Teleoperation
Systems Using H_infinity Framework." K. Kim, M. C. Cavusoglu,
and W. K. Chung. In Proceedings of the IEEE/RSJ International Conference
on Intelligent Robots and Systems (IROS 2004), Sendai, Japan, September
28 - October 2, 2004. pp. 2229-2234.
- "Virtual Reality as a Training Tool for
Endoscopic Neurosurgical Procedures." S. Manjila, M. C.
Cavusoglu, N. Brown, A. R. Cohen. The 33rd Annual Meeting of the
AANS/CNS Section on Pediatric Neurological Surgery, San Francisco,
CA, December 8-11, 2004.
Hydrocephalus award candidate.
- "Control Algorithms for Active Relative
Motion Cancelling for Robotic Assisted Off-Pump Coronary Artery Bypass
Graft Surgery." M. C. Cavusoglu, J. Rotella, W. S. Newman,
S. Choi, J. Ustin, and S. S. Sastry. In Proceedings of the 12th International
Conference on Advanced Robotics (ICAR 2005), Seattle, WA, USA, July
18th-20th, 2005, pp. 431-438.
Finalist for the conference best paper award.
- "Design and Characterization of a Novel
Hybrid Actuator Using Shape Memory Alloy and DC Motor for Minimally
Invasive Surgery Applications." V. R. Kode, M. C. Cavusoglu,
and M. Tabib-Azar. In Proceedings of the IEEE International Conference
on Mechatronics and Automation (ICMA 2005), Niagara Falls, Ontario,
Canada, July 29-August 1, 2005, pp. 416-420.
- "GiPSiNet: a Middleware for Networked Surgical
Simulations." V. Liberatore, M. C. Cavusoglu, and Q. Cai.
In Proceedings of the IASTED Telehealth 2005, Banff, Canada,
June 19-21, 2005.
- "Virtual Environment-Based Training Simulator
for Endoscopic Third Ventriculostomy." N. Brown, S. Natsupakpong,
S. Johannsen, S. Manjila, Q. Cai, V. Liberatore, A. R. Cohen, and M.
C. Cavusoglu. In Proceedings of Medicine Meets Virtual Reality XIV
(MMVR'06), Long Beach, CA, January 24 - 27, 2006, pp. 73-75.
- "Evaluation Methods of a Middleware for
Networked Surgical Simulations." Q. Cai, V. Liberatore,
M. C. Cavusoglu, and Y. Yoo. In Proceedings of Medicine Meets Virtual
Reality XIV (MMVR'06), Long Beach, CA, January 24 - 27, 2006, pp.
76-78.
- "GiPSiNet: An Open Source/Open Architecture
Network Middleware for Surgical Simulations." Q. Cai, V.
Liberatore, and M. C. Cavusoglu. In Proceedings of Medicine Meets
Virtual Reality XIV (MMVR'06), Long Beach, CA, January 24 - 27,
2006, pp. 316-371.
- "Predictive Control Algorithms Using Biological
Signals for Active Relative Motion Canceling in Robotic Assisted Heart
Surgery." O. Bebek, M.C. Cavusoglu. In Proceedings of
the IEEE International Conference on Robotics and Automation (ICRA 2006),
Orlando, FL, May 15-19, 2006, pp. 237-244.
- "Assessment of Event-Related Desynchronization
in Stroke Survivors Performing Shoulder-Elbow Movements." M. Fu, J. Daly, M.C. Cavusoglu. In Proceedings of the IEEE International
Conference on Robotics and Automation (ICRA 2006), Orlando, FL,
May 15-19, 2006, pp. 3158-3164.
- "Model Based Control Algorithms for Robotic
Assisted Beating Heart Surgery." O. Bebek and M. C. Cavusoglu.
In Proceedings of the 28th Annual International Conference of the
IEEE Engineering in Medicine and Biology Society (EMBS), August
30-September 3, 2006, New York City, USA, pp. 823-828.

- "A Detection Scheme for Frontalis and Temporalis
Muscle EMG Contamination of EEG Data." M. J. Fu, M. C. Cavusoglu,
and J. J. Daly. In Proceedings of the 28th Annual International Conference
of the IEEE Engineering in Medicine and Biology Society (EMBS),
August 30-September 3, 2006, New York City, USA, pp. 4514-4518.
- “Quantitative Comparison of Bilateral Teleoperation Systems with Various Drive Mechanisms and Sensory Configurations.” K. Kim, M. C. Cavusoglu, W. K. Chung, J. Lee. In Proceedings of the 2006 International Joint Conference of the Society of Instrument and Control Engineers (SICE), Japan, and the Institute of Control, Automation and Systems Engineers (ICASE), Korea, (SICE-ICASE 2006), Bexco, Busan, Korea, October 18-21, 2006, pp. 221-226.
- "Whisker Sensor Design for Three Dimensional
Position Measurement in Robotic Assisted Beating Heart Surgery." O Bebek and M.C. Cavusoglu. In Proceedings of the IEEE International
Conference on Robotics and Automation (ICRA 2007), Rome, Italy,
April 10-14, 2007, pp. 225-231.
- "High Fidelity Haptic Rendering of Stick-Slip
Frictional Contact with Deformable Objects in Virtual Environments Using
Multi-Rate Simulation." P. Jacobs and M.C. Cavusoglu. In Proceedings of the IEEE International Conference on Robotics and
Automation (ICRA 2007), Rome, Italy, April 10-14, 2007, pp. 117-123.

- "A Framework for Quantitative Comparison
of Bilateral Teleoperation Systems Using mu-Synthesis." K. Kim, M.C. Cavusoglu, and W. K. Chung. In Proceedings of the IEEE
International Conference on Robotics and Automation (ICRA 2007),
Rome, Italy, April 10-14, 2007 pp. 1637-1644.
- "Ontology Based Design for Integrative
Simulation of Human Physiology." E.Z. Erson, M.C. Cavusoglu.
In Proceedings of the International Symposium on Health Informatics
and Bioinformatics, Antalya, Turkey, April 30-May 2, 2007.
- "Improved Prediction of Heart Motion Using
an Adaptive Filter for Robot Assisted Beating Heart Surgery" T.J. Franke, O. Bebek, and M.C. Cavusoglu. In Proceedings of the IEEE/RSJ
International Conference on Intelligent Robots and Systems (IROS 2007)), San Diego, CA, USA, October 29- November 2, 2007, pp. 509-515.
- “Comparison of Numerical Integration Methods for Simulation of Physically-Based Deformable Object Models in Surgical Simulation. ” S. Natsupakpong, M. C. Cavusoglu. In Proceeding of the 12th Annual National Symposium on Computational Science and Engineering (ANSCSE12), Ubon Rajathanee, Thailand, March 27-29, 2008
- “Prediction of Heartbeat Motion with a Generalized Adaptive Filter.” T.J. Franke, O. Bebek, and M.C. Cavusoglu. In Proceedings of the IEEE International Conference on Robotics and Automation (ICRA 2008), Pasadena, CA, USA, May 19-23, 2008, pp. 2916-2921.

- “A Software Framework for Integrative Physiological Model Simulation.” E. Z. Erson, M. C. Cavusoglu. Submitted to the 20th International Conference on Software Engineering and Knowledge Engineering (SEKE 2008), Redwood City, CA, July 1-3, 2008. (In Press).

- “A Software Framework for Multiscale and Multilevel Physiological Model Integration and Simulation.” E. Z. Erson, M. C. Cavusoglu. In Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2008), Vancouver, Canada, August 20-24, 2008. (In Press).

- “Comparison of Filtering and Classification Techniques of Electroencephalogram (EEG) for Brain-Computer Interface.” M. Renfrew, J. J. Daly, and M. C. Cavusoglu. In Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2008), Vancouver, Canada, August 20-24, 2008. (In Press).

- "Design of a Small Animal Biopsy Robot. " O. Bebek, M. J. Hwang, B. Fei, and M. C. Cavusoglu. In Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2008), Vancouver, Canada, August 20-24, 2008. (In Press).

PhD Thesis
- "Telesurgery and Surgical Simulation: Design,
Modeling, and Evaluation of Haptic Interfaces to Real and Virtual Surgical
Environments." M. C. Cavusoglu. PhD Thesis. University of
California, Berkeley, August 23, 2000. Also UC Berkeley ERL Memo
M00/43, August 2000.

Video
- "Laparoscopic Telesurgical Workstation." M. C. Cavusoglu, M. Cohn, F. Tendick, and S. S. Sastry. In
the Video Proceedings of the IEEE International Conference on Robotics
and Automation (ICRA'99), Detroit, MI, May 10-15, 1999.
Technical Reports
- "Closed Loop Position and Force Control
of Anthrobot III Robot Hand." M. C. Cavusoglu, G. Avkarogullari,
and I.S. Koc. B.S. Project Report, (also report for TUBITAK AEAGE
Project No 95-20-100), Department of Electrical and Electronic Engineering,
Middle East Technical University, Ankara, Turkey, Spring 1996.

- "Control of a Telesurgical Workstation." M. C. Cavusoglu. M.S. Project Report. University of California
at Berkeley, May 20, 1997. Also UC Berkeley ERL Memo M97/35, May
1997.

- "Multirate Simulation for High Fidelity
Haptic Interaction with Deformable Objects in Virtual Environments."
M. C. Cavusoglu. UC Berkeley ERL Memo M00/5, January 24, 2000.

- "Kinematics and Dynamics of Phantom(TM)
model 1.5 Haptic Interface." M. C. Cavusoglu, D. Feygin.
UC Berkeley ERL Memo M01/15, March 20, 2001.

- "GiPSi: A Draft Open Source/Open Architecture
Software Development Framework for Surgical Simulation," T. Goktekin and M.C. Cavusoglu. Technical Report, Case Western Reserve
University, 2004.

- "Issues in Development of High Confidence
Medical Robotic Systems, Medical Simulations, and Networked Virtual
Environments for Surgical Training," M. C. Cavusoglu. Position
paper for High Confidence Medical Device Software and Systems (HCMDSS)
Workshop, Philadelphia, PA, June 2-3, 2005.
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